Welcome to MetaPUF

MetaPUF is a set of piplines to generate study specific protein sequence database/(s) from metagenomics and/or metatranscriptomics data, used to analyse mass-spectrometry based metaproteomics and visualise the integrated information in the MGnify website. All the pipelines are wrapped in Snakemake.

The workflow is defined in snakemake and is available at MetaPUF

Contents

• Installation and usage
  • Pre-requisites
  • Installation
  • Usage
• Workflow
• Inputs of MetaPUF
  • Mandatory inputs
  • Other input parameters
• Outputs of MetaPUF
• An Example

How to cite

Contributors